Parse Biosciences provides a pipeline that can be run locally or on your server. The pipeline takes FASTQ files and delivers processed data in the form of a cell-gene count matrix, which serves as the input for various open sources tools such as Scanpy and Seurat. The pipeline also delivers an experimental summary report with run statistics. The pipeline is available to all Parse customers and is available on our support site at support.parsebiosciences.com in the "Computational Support Section". If you do not see the "Pipeline Download" link, please contact your Parse FAS or support@parsebiosciences.com.
